STRINGSTRING
Phatr18469 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr18469" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr18469Predicted protein (547 aa)    
Predicted Functional Partners:
GltX
Ferredoxin-dependent glutamate synthase, fusion of large and small subunits (1591 aa)
       
 
  0.644
Phatr24739
Predicted protein (1594 aa)
       
 
  0.644
Phatr45672
Predicted protein (557 aa)
   
          0.504
Phatr46251
Predicted protein (564 aa)
   
          0.482
Phatrdraft462
Predicted protein (555 aa)
   
     
  0.475
Phatr54983
Predicted protein; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria (891 aa)
           
  0.440
TPI/GapC3
Triosephosphate isomerase/glyceraldehyde-3-phosphate dehydrogenase (614 aa)
       
 
  0.439
ACL
Atp-citrate synthase (1082 aa)
     
 
  0.439
Phatr50182
Predicted protein (554 aa)
         
  0.423
Phatr42527
Predicted protein (522 aa)
         
  0.423
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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