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EF-1 protein (Phaeodactylum tricornutum) - STRING interaction network
"EF-1" - Elongation factor 1-alpha in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EF-1Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis (439 aa)    
Predicted Functional Partners:
Phatr26176
Predicted protein (408 aa)
     
  0.995
Phatrdraft977
Predicted protein (334 aa)
     
  0.974
Phatr51018
Predicted protein (397 aa)
     
  0.974
Phatr13361
Predicted protein (389 aa)
     
  0.972
Phatr17545
Predicted protein (261 aa)
     
  0.916
Phatr50796
Predicted protein (457 aa)
     
  0.881
Phatr35766
Predicted protein (828 aa)
 
0.875
Phatr13682
Predicted protein; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits (220 aa)
   
  0.871
Phatr48411
Predicted protein (264 aa)
     
  0.864
Phatr30660
Predicted protein (273 aa)
     
  0.862
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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