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Phatr18524 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr18524" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr18524Predicted protein (766 aa)    
Predicted Functional Partners:
PheRS
Phenylalanyl-trna synthetase class IIc family protein (405 aa)
   
 
  0.923
rpl20
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit (98 aa)
   
  0.884
Phatr12238
Predicted protein (184 aa)
     
  0.861
Phatr10617
Predicted protein (229 aa)
     
  0.852
Phatr14713
Predicted protein (137 aa)
   
  0.851
Phatr5769
Predicted protein (190 aa)
     
  0.843
Phatr10774
Predicted protein (167 aa)
     
  0.843
Phatr8720
Predicted protein (116 aa)
     
  0.839
Phatr27659
Predicted protein (157 aa)
     
  0.839
Phatr7358
Predicted protein (137 aa)
   
  0.830
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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