STRINGSTRING
Phatr18549 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr18549" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr18549Predicted protein (1250 aa)    
Predicted Functional Partners:
Phatr21660
Predicted protein (2400 aa)
     
  0.989
Phatr21147
Predicted protein (307 aa)
       
  0.905
Phatr10539
Predicted protein (328 aa)
     
  0.864
Phatr30282
Predicted protein (341 aa)
     
  0.854
Phatr15031
Predicted protein (118 aa)
     
  0.854
Phatr36142
Predicted protein (320 aa)
       
  0.850
Phatr14103
Predicted protein (298 aa)
       
  0.817
Phatr44708
Predicted protein (790 aa)
     
  0.811
Phatr42892
Predicted protein (4067 aa)
     
  0.811
Phatr11144
Predicted protein (127 aa)
     
 
  0.795
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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