STRINGSTRING
Phatr18893 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr18893" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr18893Predicted protein (363 aa)    
Predicted Functional Partners:
FAO1
Peroxisomal bifunctional enzyme (767 aa)
       
  0.741
Phatr35240
Predicted protein (684 aa)
       
  0.741
Phatr17427
Predicted protein (695 aa)
       
  0.579
FABG
3-oxoacyl-[acyl-carrier protein (253 aa)
 
 
  0.563
Phatr45918
Predicted protein (288 aa)
   
 
  0.557
Phatr45504
Predicted protein (373 aa)
   
 
  0.557
Phatr44719
Predicted protein (365 aa)
   
 
  0.557
Phatr44630
Predicted protein (277 aa)
   
 
  0.557
Phatr43764
Predicted protein (365 aa)
   
 
  0.557
Phatr43164
Predicted protein (298 aa)
   
 
  0.557
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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