STRINGSTRING
Phatr18945 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr18945" - Transport protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr18945Transport protein (562 aa)    
Predicted Functional Partners:
NTT2
Nucleotide transporter 2 (479 aa)
           
  0.510
NTT1
Nucleotide transporter 1 (610 aa)
           
  0.430
SOD1
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems (216 aa)
           
  0.426
hemE
Uroporphyrinogen decarboxylase (366 aa)
           
  0.420
Phatrdraft972
Ammonium_transporter (540 aa)
           
  0.420
Phatr54981
Predicted protein (539 aa)
           
  0.420
Phatr27877
Predicted protein (521 aa)
           
  0.420
Phatr1862
Predicted protein (431 aa)
           
  0.420
Phatr1813
Predicted protein (433 aa)
           
  0.420
Phatr13418
Predicted protein (437 aa)
           
  0.420
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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