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Phatr19000 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr19000" - Farnesyltranstransferase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr19000Farnesyltranstransferase (337 aa)    
Predicted Functional Partners:
Phatr12533
Predicted protein (222 aa)
 
  0.969
Phatr12972
Predicted protein (247 aa)
 
  0.968
Phatr16932
Predicted protein (361 aa)
       
  0.953
Phatr31683
Predicted protein (426 aa)
   
  0.947
HDR
Putative plastid isopentenyl diphosphate/dimethylallyl diphosphate synthase (401 aa)
   
  0.943
Phatr49325
Predicted protein (343 aa)
         
  0.940
Phatr47271
Predicted protein (330 aa)
         
  0.935
Phatr45841
Predicted protein (331 aa)
     
 
  0.935
MPDC
MPDC mevalonate diphosphate decarboxylase (415 aa)
   
  0.928
Phatr13160
Predicted protein (314 aa)
   
  0.927
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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