STRINGSTRING
Phatr1905 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr1905" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr1905Predicted protein (420 aa)    
Predicted Functional Partners:
Phatr43899
Predicted protein (352 aa)
       
  0.682
Phatr28433
Ubiquitin carrier protein (167 aa)
     
  0.638
PAS2
Ubiquitin carrier protein (168 aa)
       
  0.619
Phatr36198
Ubiquitin carrier protein (163 aa)
       
  0.619
Phatr30092
Predicted protein (147 aa)
       
  0.619
UBC2
Ubiquitin carrier protein (147 aa)
       
  0.619
Phatr26750
Ubiquitin carrier protein (153 aa)
       
  0.618
UBC1
Ubiquitin carrier protein (197 aa)
       
  0.614
Phatr5608
Ubiquitin carrier protein (161 aa)
       
  0.608
sUbc6
Predicted protein (118 aa)
       
  0.607
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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