STRINGSTRING
PSP protein (Phaeodactylum tricornutum) - STRING interaction network
"PSP" - Phosphoserine phosphatase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSPPhosphoserine phosphatase (242 aa)    
Predicted Functional Partners:
PSAT
Phosphoserine transaminase (409 aa)
   
 
  0.969
Phatr8717
Serine hydroxymethyltransferase; Interconversion of serine and glycine (464 aa)
   
  0.957
SHMT2
Serine hydroxymethyltransferase; Interconversion of serine and glycine (501 aa)
   
  0.957
SHMT
Serine hydroxymethyltransferase; Interconversion of serine and glycine (473 aa)
   
  0.957
Phatr41702
Predicted protein (671 aa)
       
  0.934
Cbs
Predicted protein (469 aa)
       
  0.916
Phatrdraft877
L-serine ammonia-lyase (340 aa)
       
  0.907
Phatr19518
Predicted protein (479 aa)
       
  0.907
Phatr13987
Predicted protein (347 aa)
       
  0.907
Phatr13476
Predicted protein (271 aa)
         
  0.866
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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