STRINGSTRING
CPD1 protein (Phaeodactylum tricornutum) - STRING interaction network
"CPD1" - Cyclobutane pyrimidine dimer 1 in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPD1Cyclobutane pyrimidine dimer 1 (515 aa)    
Predicted Functional Partners:
Phatr7026
Predicted protein (102 aa)
       
  0.644
Phatr51110
Predicted protein (428 aa)
       
  0.644
CK1
Predicted protein (310 aa)
       
  0.644
Phatr21821
Predicted protein (311 aa)
       
  0.644
Phatr29633
Predicted protein (949 aa)
 
     
  0.612
TIM_2
Timeless (944 aa)
       
  0.567
Phatr55091
Predicted protein (524 aa)
   
          0.523
ACL
Atp-citrate synthase (1082 aa)
   
   
  0.490
Phatr48601
Predicted protein (360 aa)
 
          0.485
Phatr31367
Predicted protein (819 aa)
   
   
  0.444
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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