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STRINGSTRING
Phatr19518 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr19518" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr19518Predicted protein (479 aa)    
Predicted Functional Partners:
Phatr41702
Predicted protein (671 aa)
   
 
  0.972
Phatr49372
Predicted protein (400 aa)
   
 
  0.932
Phatr8717
Serine hydroxymethyltransferase; Interconversion of serine and glycine; Belongs to the SHMT family (464 aa)
     
 
  0.926
SHMT2
Serine hydroxymethyltransferase; Interconversion of serine and glycine; Belongs to the SHMT family (501 aa)
     
 
  0.926
SHMT
Serine hydroxymethyltransferase; Interconversion of serine and glycine; Belongs to the SHMT family (473 aa)
     
 
  0.926
Phatr49056
Predicted protein (504 aa)
   
 
  0.923
Phatr13987
Predicted protein (347 aa)
   
   
0.919
PSP
Phosphoserine phosphatase (242 aa)
   
 
  0.919
Cbs
Cystathionine beta-synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family (469 aa)
   
 
  0.914
Phatr18319
Adenosylhomocysteinase (481 aa)
   
 
  0.880
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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