STRINGSTRING
Phatr19579 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr19579" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr19579Predicted protein (843 aa)    
Predicted Functional Partners:
Phatrdraft1812
Predicted protein (609 aa)
 
  0.950
Phatr42548
Predicted protein (346 aa)
   
   
  0.825
Phatr52174
DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1143 aa)
   
   
  0.736
Phatr13581
DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1165 aa)
   
   
  0.736
Phatr3425
Predicted protein (394 aa)
 
 
  0.699
Phatr15294
Predicted protein (368 aa)
 
 
  0.696
Phatrdraft1331
Predicted protein (548 aa)
     
 
  0.665
Phatr44627
Predicted protein (652 aa)
     
 
  0.665
Phatr20124
Predicted protein (400 aa)
     
 
  0.665
VPS45
Predicted protein (555 aa)
 
 
        0.665
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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