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STRINGSTRING
Phatr19579 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr19579" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr19579Predicted protein (843 aa)    
Predicted Functional Partners:
Phatrdraft1812
Predicted protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin- like GTPase superfamily. TrmE GTPase family (609 aa)
 
  0.857
Phatr15294
Predicted protein (368 aa)
 
 
  0.850
Phatr3425
Predicted protein (394 aa)
 
 
  0.850
PHATR_3578
Pseudouridine synthase (293 aa)
   
   
  0.801
Phatr2271
GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis (489 aa)
   
 
  0.756
Phatr17172
Predicted protein (551 aa)
   
 
  0.756
VPS45
Predicted protein; Belongs to the STXBP/unc-18/SEC1 family (555 aa)
 
 
        0.696
Phatr48416
Predicted protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family (511 aa)
     
   
  0.619
Phatr3334
annotation not available (290 aa)
     
   
  0.619
GluRS_2
Glutamyl-trna synthase; Belongs to the class-I aminoacyl-tRNA synthetase family (588 aa)
   
   
  0.599
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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