STRINGSTRING
Phatr1990 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr1990" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr1990Predicted protein (390 aa)    
Predicted Functional Partners:
Phatr42841
Predicted protein (915 aa)
       
 
  0.849
Phatr24186
Predicted protein (1088 aa)
     
 
  0.750
Phatr10722
Predicted protein (153 aa)
   
   
  0.701
Phatr43680
Predicted protein (1458 aa)
       
 
  0.651
Phatr45854
Predicted protein (1689 aa)
     
 
  0.542
Phatr24439
Predicted protein (357 aa)
     
 
  0.450
Phatr43406
Predicted protein (1209 aa)
     
 
  0.429
Phatr33072
Predicted protein (872 aa)
     
 
  0.429
Phatr43708
Predicted protein (501 aa)
       
      0.422
Phatr27838
Predicted protein (1040 aa)
     
   
  0.414
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
Server load: low (14%) [HD]