• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Phatr19949 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr19949" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr19949Predicted protein (393 aa)    
Predicted Functional Partners:
Phatr20360
annotation not available (318 aa)
   
 
  0.708
PDHB1
Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2 (360 aa)
   
 
  0.708
Phatr45557
Predicted protein (253 aa)
   
 
  0.703
Phatr40430
Dihydrolipoamide succinyltransferase (377 aa)
 
 
  0.703
MDH
Predicted protein; Belongs to the LDH/MDH superfamily (324 aa)
   
 
  0.658
TPI/GapC3
Triosephosphate isomerase/glyceraldehyde-3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family (614 aa)
   
   
  0.643
Phatr11021
Predicted protein (323 aa)
   
 
  0.630
SDH2
Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q) (273 aa)
   
 
  0.623
Fum
Fumarate hydratase (462 aa)
   
 
  0.609
DHLTA_4
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; Dihydrolipoamide acetyl transferase (525 aa)
 
 
  0.593
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
Server load: low (13%) [HD]