STRINGSTRING
Phatr20188 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr20188" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr20188Predicted protein (693 aa)    
Predicted Functional Partners:
Phatr31919
Predicted protein (305 aa)
   
  0.994
Phatr23324
Predicted protein (176 aa)
   
  0.993
Phatr13361
Predicted protein (389 aa)
   
  0.989
rpl2
Predicted protein (257 aa)
 
  0.985
Phatr10617
Predicted protein (229 aa)
   
  0.984
Phatr19025
Predicted protein (205 aa)
 
  0.970
Phatr16065
Predicted protein (252 aa)
     
 
  0.969
Phatr29097
Predicted protein (225 aa)
   
  0.968
Phatr5769
Predicted protein (190 aa)
   
  0.965
Phatr43162
Predicted protein (146 aa)
   
  0.965
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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