• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Phatr20308 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr20308" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr20308Predicted protein; Belongs to the ubiquitin-conjugating enzyme family (148 aa)    
Predicted Functional Partners:
Phatr15239
Predicted protein (256 aa)
     
 
  0.948
Phatr26750
Ubiquitin carrier protein; Belongs to the ubiquitin-conjugating enzyme family (153 aa)
     
 
  0.937
Phatr50124
Predicted protein (1144 aa)
     
 
  0.917
Phatr43821
Predicted protein (631 aa)
       
 
  0.911
UBC1
Ubiquitin-conjugating enzyme 1; Ubiquitin carrier protein; Belongs to the ubiquitin-conjugating enzyme family (197 aa)
     
 
  0.909
Phatr27762
Ubiquitin carrier protein; Belongs to the ubiquitin-conjugating enzyme family (160 aa)
     
 
  0.901
Phatr49385
Predicted protein (1125 aa)
       
 
  0.900
Phatr28433
Ubiquitin carrier protein; Belongs to the ubiquitin-conjugating enzyme family (167 aa)
     
 
  0.880
PCNA
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (260 aa)
     
 
  0.848
Rad22
Predicted protein (468 aa)
       
 
  0.843
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
Server load: low (6%) [HD]