STRINGSTRING
Phatr20310 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr20310" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr20310Predicted protein (434 aa)    
Predicted Functional Partners:
Phatr35240
Predicted protein (684 aa)
   
  0.993
Phatr55192
Hydratase enyol-coa hydratase (269 aa)
   
  0.975
Phatr45947
Predicted protein (403 aa)
   
 
  0.974
KCT1
Beta-ketoacyl-coa thiolase (386 aa)
   
 
  0.974
KCT3
Beta-ketoacyl-CoA thiolase (457 aa)
   
 
  0.974
Phatr23913
Acetyl-coa c-acetyltransferase (396 aa)
   
 
  0.974
DHLTA_4
Dihydrolipoamide acetyl transferase (525 aa)
     
  0.939
FAO1
Peroxisomal bifunctional enzyme (767 aa)
   
  0.939
Phatr25572
Predicted protein (470 aa)
   
 
0.914
ACC2
Biotin carboxylase (2282 aa)
   
 
  0.882
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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