STRINGSTRING
Phatr20318 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr20318" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr20318Predicted protein (460 aa)    
Predicted Functional Partners:
SUMO
Small ubiquitin-like modifier (103 aa)
       
  0.792
Phatr12578
Predicted protein (68 aa)
       
  0.792
Phatr9137
Predicted protein (114 aa)
   
  0.788
Phatr41667
Autophagy-related protein 3 (302 aa)
     
  0.778
Phatr47293
Predicted protein (580 aa)
 
   
  0.775
Phatr50303
Predicted protein (124 aa)
       
  0.771
Phatr48810
Ubiquitin carrier protein (220 aa)
       
  0.769
Phatr19901
Predicted protein (900 aa)
   
  0.761
sUbi
Ubiquitin-like protein (268 aa)
     
  0.709
hUbi
Predicted proteinUbiquitin extension protein 4 (381 aa)
     
  0.709
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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