STRINGSTRING
Phatr20335 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr20335" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr20335Predicted protein (665 aa)    
Predicted Functional Partners:
Phatr54743
Predicted protein (347 aa)
     
  0.978
Phatr19982
Predicted protein (2347 aa)
     
  0.977
Phatrdraft1638
Predicted protein (548 aa)
     
  0.974
Phatr17408
Predicted protein (1303 aa)
     
  0.971
Phatr13053
Predicted protein (725 aa)
     
  0.965
Phatr13192
Predicted protein (74 aa)
     
  0.965
Phatr35766
Predicted protein (828 aa)
     
  0.964
Phatr11785
Predicted protein (631 aa)
     
  0.961
Phatr16704
Predicted protein (1045 aa)
     
  0.959
Phatr20135
Predicted protein (690 aa)
     
  0.957
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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