STRINGSTRING
Phatr20424 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr20424" - Urea transporter in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr20424Urea transporter (704 aa)    
Predicted Functional Partners:
Phatr13232
Predicted protein (505 aa)
   
   
  0.686
PHATR_1155
Predicted protein (509 aa)
   
   
  0.686
ACL
Atp-citrate synthase (1082 aa)
   
   
  0.633
Phatr11151
Predicted protein (292 aa)
   
   
  0.507
GAPN
Glyceraldehyde-3-phosphate dehydrogenase (588 aa)
   
   
  0.492
Phatr31906
Aldehyde dehydrogenase (551 aa)
   
   
  0.492
SSDH
Succinate semialdehyde dehydrogenase (471 aa)
   
   
  0.492
SSD1
Succinate semialdehyde dehydrogenase (533 aa)
   
   
  0.492
Phatr20445
Predicted protein (524 aa)
   
   
  0.492
Phatr16540
Aldehyde dehydrogenase (432 aa)
   
   
  0.492
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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