STRINGSTRING
Phatr20460 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr20460" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr20460Predicted protein (499 aa)    
Predicted Functional Partners:
Phatr37086
Predicted protein (226 aa)
         
  0.932
Phatr33864
Predicted protein (465 aa)
         
  0.932
Phatr12431
Predicted protein (801 aa)
         
  0.931
Phatr43773
Predicted protein (398 aa)
         
  0.930
GPT1
Glycerol-3-phosphate o-acyltransferase (551 aa)
     
  0.922
LPT1
1-acyl-sn-glycerol-3-phosphate acyltransferase (399 aa)
       
  0.910
Phatr42446
Predicted protein (315 aa)
       
  0.910
Phatr11916
Predicted protein (144 aa)
       
  0.910
Phatrdraft559
Predicted protein (368 aa)
     
 
  0.906
Phatr7678
Predicted protein (134 aa)
     
 
  0.906
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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