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TMT protein (Phaeodactylum tricornutum) - STRING interaction network
"TMT" - Tocopherol o-methyltransferase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TMTTocopherol o-methyltransferase (318 aa)    
Predicted Functional Partners:
Phatrdraft1025
Tocopherol cyclase (515 aa)
       
  0.956
Phatr14208
Predicted protein (249 aa)
     
 
  0.782
Phatr31339
Predicted protein (482 aa)
       
 
  0.776
Phatr10852
Predicted protein (167 aa)
       
 
  0.758
Phatr48864
Reductase with NAD or NADP as acceptor (395 aa)
       
 
  0.758
PHATR_645
Acetyl-coenzyme A synthetase (678 aa)
       
 
  0.757
PSY
Phytoene synthase (309 aa)
       
 
  0.720
Phatr13160
Predicted protein (314 aa)
       
 
  0.720
Phatr48260
Predicted protein (467 aa)
     
 
  0.691
Phatr30461
Predicted protein (463 aa)
     
 
  0.691
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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