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Phatr20547 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr20547" - Homeobox protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr20547Homeobox protein (646 aa)    
Predicted Functional Partners:
Phatr30967
Predicted protein (539 aa)
 
  0.995
Phatr44618
2-isopropylmalate synthase (663 aa)
 
 
  0.982
Phatr43697
Branched-chain-amino-acid aminotransferase (356 aa)
   
  0.981
Phatr32849
Predicted protein (299 aa)
   
  0.981
Phatr28585
Branched-chain-amino-acid aminotransferase (326 aa)
   
  0.981
Phatr10779
Predicted protein (359 aa)
   
  0.981
Phatr38362
2-isopropylmalate synthase (581 aa)
   
 
  0.971
Phatrdraft348
Predicted protein (521 aa)
 
  0.957
Phatr24772
Predicted protein (801 aa)
 
 
  0.946
Phatr8765
Predicted protein (287 aa)
         
  0.912
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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