STRINGSTRING
Phatr20574 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr20574" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr20574Predicted protein (720 aa)    
Predicted Functional Partners:
Phatr36847
Predicted protein (111 aa)
       
  0.978
ERCC2
Xeroderma pigmentosum group D complementing protein (782 aa)
     
  0.978
MAT1
Predicted protein (294 aa)
       
  0.975
Phatr44108
Predicted protein (358 aa)
       
  0.975
Phatr24922
Predicted protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (111 aa)
       
  0.963
Phatr10148
Predicted protein (129 aa)
       
  0.961
TFIIH-p44
Suppressor of stem-loop protein 1 (413 aa)
     
  0.912
Phatr30925
Predicted protein (601 aa)
     
  0.887
Phatr46429
Predicted protein (312 aa)
     
  0.880
Phatr15555
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1706 aa)
     
  0.859
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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