STRINGSTRING
Phatr20589 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr20589" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr20589Predicted protein (434 aa)    
Predicted Functional Partners:
Phatr35766
Predicted protein (828 aa)
     
  0.909
Phatr8694
Predicted protein (63 aa)
       
  0.843
Phatr5236
Predicted protein (271 aa)
   
  0.739
Phatr44833
Predicted protein (461 aa)
     
  0.694
Phatr11189
Predicted protein (729 aa)
     
  0.694
Phatr49459
Predicted protein (868 aa)
       
  0.691
Phatr45319
Predicted protein (1013 aa)
       
  0.691
Phatr20188
Predicted protein (693 aa)
       
  0.691
Phatr5702
Predicted protein (227 aa)
   
     
  0.547
Phatr13820
Predicted protein (282 aa)
     
        0.489
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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