STRINGSTRING
Phatr20677 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr20677" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr20677Predicted protein (236 aa)    
Predicted Functional Partners:
Phatr9255
Predicted protein (278 aa)
       
 
  0.474
ELO6b_1
Delta 6 desaturase (216 aa)
       
 
  0.474
ELO6b_2
Elongase delta 6 elongase (278 aa)
       
 
  0.474
ACC2
Biotin carboxylase (2282 aa)
     
   
  0.421
Phatr46479
Translation initiation factor eif-2bgamma (758 aa)
       
      0.400
Phatr42307
Predicted protein (453 aa)
       
      0.400
Phatr34538
Predicted protein (320 aa)
       
      0.400
Phatr21290
Predicted protein (385 aa)
       
      0.400
Phatr14255
Predicted protein (326 aa)
       
      0.400
Phatr11271
Predicted protein (167 aa)
       
      0.400
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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