STRINGSTRING
Phatr20708 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr20708" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr20708Predicted protein (475 aa)    
Predicted Functional Partners:
Phatr29758
Predicted protein (895 aa)
     
   
  0.428
Phatr29309
Predicted protein (842 aa)
     
   
  0.428
Phatr47106
Predicted protein (171 aa)
     
   
  0.408
Phatr44868
Predicted protein (545 aa)
     
   
  0.408
Phatr38448
Predicted protein (153 aa)
     
   
  0.408
Phatr1884
Predicted protein (435 aa)
     
   
  0.408
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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