STRINGSTRING
Phatr20740 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr20740" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr20740Predicted protein (837 aa)    
Predicted Functional Partners:
BMS1
Ribosome biogenesis protein BMS1 (1096 aa)
     
 
  0.986
Phatr18258
Predicted protein (743 aa)
     
      0.985
Phatr25666
Predicted protein (885 aa)
     
 
  0.968
Phatr51897
Predicted protein (531 aa)
     
      0.967
Phatr708
Predicted protein (511 aa)
     
 
  0.962
Phatr11894
Predicted protein (209 aa)
     
      0.962
Phatr45727
Predicted protein (948 aa)
     
 
  0.962
Phatr47058
Predicted protein (606 aa)
     
      0.958
Phatr47176
Predicted protein (435 aa)
     
      0.958
Phatr25394
Predicted protein (528 aa)
     
      0.958
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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