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HemE_1 protein (Phaeodactylum tricornutum) - STRING interaction network
"HemE_1" - Uroporphyrinogen decarboxylase in Phaeodactylum tricornutum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HemE_1Uroporphyrinogen decarboxylase (431 aa)    
Predicted Functional Partners:
HemF_3
Coproporphyrinogen oxidase (292 aa)
   
 
  0.874
HemF_1
Coproporphyrinogen III oxidase (304 aa)
   
 
  0.816
HemF_2
Coproporphyrinogen oxidase. coproporphyrinogen III oxidase. coproporphyrinogenase (292 aa)
   
 
  0.816
Phatr26952
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX (421 aa)
 
   
  0.812
hemC
Hydroxymethylbilane synthase (329 aa)
 
 
  0.790
GltX
Ferredoxin-dependent glutamate synthase, fusion of large and small subunits (1591 aa)
   
   
  0.778
Phatr24739
Predicted protein (1594 aa)
   
   
  0.778
PPO
Protoporphyrinogen oxidase (520 aa)
 
   
  0.757
Phatr41746
Delta-aminolevulinic acid dehydratase (345 aa)
   
 
  0.743
Phatr52174
DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1143 aa)
         
  0.677
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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