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AroB protein (Phaeodactylum tricornutum) - STRING interaction network
"AroB" - 3-dehydroquinate synthase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AroB3-dehydroquinate synthase (431 aa)    
Predicted Functional Partners:
Phatr6807
Predicted protein (163 aa)
 
  0.982
AroA
3-deoxy-7-phosphoheptulonate synthase (500 aa)
   
 
  0.969
Phatr7664
Predicted protein (145 aa)
   
 
  0.969
Phatr43429
Chorismate synthase (442 aa)
 
  0.923
EPSPsy
3-phosphoshikimate 1-carboxyvinyltransferase (483 aa)
 
  0.893
Phatrdraft1682
Anthranilate synthase (927 aa)
   
 
  0.839
Phatr17238
Anthranilate synthase (958 aa)
   
 
  0.839
Phatr8772
Predicted protein (309 aa)
   
   
 
0.823
PHATR_3140
Predicted protein (196 aa)
   
 
  0.813
Phatr41702
Predicted protein (671 aa)
   
   
  0.757
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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