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Phatr2087 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr2087" - Thymidylate synthase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr2087Thymidylate synthase (217 aa)    
Predicted Functional Partners:
MCM5
Predicted protein (667 aa)
     
   
  0.959
PCNA
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (260 aa)
     
 
  0.899
Phatr39306
Predicted protein (296 aa)
   
 
  0.889
Phatr17523
Predicted protein (409 aa)
   
 
  0.889
Phatr45529
Ribonucleoside-diphosphate reductase; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides (926 aa)
   
   
  0.868
Phatr42726
Ribonucleoside-diphosphate reductase; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides (814 aa)
   
   
  0.868
PHATR_7646
Predicted protein (137 aa)
   
  0.863
MCM4
Predicted protein (791 aa)
     
   
  0.825
GDCP
Glycine decarboxylase p-protein (1005 aa)
     
  0.773
Phatr9348
Predicted protein (172 aa)
   
  0.770
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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