STRINGSTRING
Phatr20893 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr20893" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr20893Predicted protein (331 aa)    
Predicted Functional Partners:
Phatr2271
GTP-binding protein engA; GTPase that plays an essential role in the late steps of ribosome biogenesis (489 aa)
 
   
  0.603
Phatr8859
Predicted protein (168 aa)
   
  0.554
Phatr48756
Predicted protein (383 aa)
   
  0.554
Phatr47695
Predicted protein (418 aa)
   
  0.554
Phatr44844
Predicted protein (424 aa)
   
  0.554
Phatr44334
Predicted protein (497 aa)
   
  0.554
Phatr35424
Predicted protein (311 aa)
   
  0.554
Phatr15960
Predicted protein; Responsible for synthesis of pseudouridine from uracil (325 aa)
   
  0.554
Phatr15666
Predicted protein (235 aa)
   
  0.554
Phatr14067
Predicted protein (271 aa)
   
  0.554
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
Server load: low (2%) [HD]