STRINGSTRING
Phatr20905 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr20905" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr20905Predicted protein (332 aa)    
Predicted Functional Partners:
AAT_2
Aspartate aminotransferase (426 aa)
       
  0.931
AAT_1
Aspartate transaminase (435 aa)
       
  0.931
Phatr18337
Predicted protein (596 aa)
         
  0.908
Phatr21116
Argininosuccinate synthase (418 aa)
         
  0.906
Phatr44003
Predicted protein (354 aa)
         
  0.901
Phatr26256
Adenylosuccinate synthetase; Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP (By similarity) (526 aa)
         
  0.900
Phatr22113
Bifunctional aspartokinase (870 aa)
       
  0.867
Phatr44902
Predicted protein (382 aa)
         
    0.842
Phatr52316
Aspartokinase (468 aa)
       
  0.813
Phatr17238
Anthranilate synthase (958 aa)
   
 
  0.606
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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