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STRINGSTRING
Phatr2097 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr2097" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr2097Predicted protein; Belongs to the DEAD box helicase family (552 aa)    
Predicted Functional Partners:
Phatr45319
Predicted protein (1013 aa)
     
 
  0.945
Phatr13192
Predicted protein (74 aa)
     
 
  0.936
Phatr52260
Predicted protein (107 aa)
     
 
  0.839
Phatr708
Predicted protein (511 aa)
     
 
  0.831
Phatr10251
Predicted protein (306 aa)
     
 
  0.817
RPN3
Regulatory proteasome non-atpase subunit 3 (323 aa)
     
 
  0.806
Phatr27039
Predicted protein (634 aa)
     
 
  0.780
Phatr23865
Predicted protein (720 aa)
     
 
  0.778
Phatr23959
Polyadenylate-binding protein; Binds the poly(A) tail of mRNA (605 aa)
     
 
  0.746
Phatr16603
Predicted protein (599 aa)
   
 
  0.746
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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