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SQD1 protein (Phaeodactylum tricornutum) - STRING interaction network
"SQD1" - UDP-sulfoquinovose synthase, plastid in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SQD1UDP-sulfoquinovose synthase, plastid (456 aa)    
Predicted Functional Partners:
UGDH1
UDP-glucose 6-dehydrogenase (475 aa)
   
 
  0.968
SQD2
Glycosyl transferase, group 1 (507 aa)
 
 
  0.948
Phatr54493
Udp-n-acetylglucosamine diphosphorylase (600 aa)
   
 
  0.937
GALK1
Galactokinase (397 aa)
   
 
  0.905
GALE1
UDP-glucose 4-epimerase (358 aa)
         
    0.900
Phatr27190
Predicted protein (365 aa)
         
    0.900
Phatr44406
Predicted protein (1782 aa)
   
 
  0.863
Phatr23281
Predicted protein (319 aa)
   
   
  0.642
Phatr45434
Nad-dependent epimerase/dehydratase (364 aa)
   
  0.621
Phatr15125
Predicted protein (311 aa)
     
  0.609
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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