STRINGSTRING
Phatr21501 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr21501" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr21501Predicted protein (175 aa)    
Predicted Functional Partners:
Phatr49524
Predicted protein (926 aa)
     
  0.950
Phatr573
Predicted protein (665 aa)
     
  0.946
Rab11
Predicted protein (214 aa)
       
  0.939
Phatr30282
Predicted protein (341 aa)
     
0.934
Phatrdraft1611
PhospholipasePredicted protein (889 aa)
         
  0.930
PLC-delta
Phospholipase C isoform delta (865 aa)
         
  0.930
Phatr43010
Predicted protein (219 aa)
         
    0.900
Arf1
Predicted protein (184 aa)
     
  0.831
Ras1
Predicted protein (191 aa)
       
  0.744
ARL1
Predicted protein (184 aa)
       
  0.744
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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