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Rab6 protein (Phaeodactylum tricornutum) - STRING interaction network
"Rab6" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rab6Predicted protein (236 aa)    
Predicted Functional Partners:
Phatr14850
Predicted protein (653 aa)
     
  0.974
RabGDI
Predicted protein (446 aa)
     
 
  0.967
Arf1
Predicted protein (184 aa)
     
  0.801
Rab2
Predicted protein (210 aa)
   
0.798
Rab11
Predicted protein (214 aa)
   
0.798
ARL1
Predicted protein (184 aa)
     
  0.767
Ras1
Predicted protein (191 aa)
   
0.757
Phatr43871
Predicted protein (673 aa)
     
 
  0.742
Rab1b
Predicted protein (208 aa)
   
0.732
Rab18
Predicted protein (213 aa)
   
0.727
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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