STRINGSTRING
Phatr21538 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr21538" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr21538Predicted protein; Involved in nucleolar processing of pre-18S ribosomal RNA (256 aa)    
Predicted Functional Partners:
Phatr36927
Predicted protein (409 aa)
     
 
  0.980
Phatr12679
Predicted protein (290 aa)
     
 
  0.979
Phatr19647
Predicted protein (354 aa)
     
 
  0.974
Phatr51007
Predicted protein (296 aa)
     
 
  0.973
Phatr8777
Predicted protein (110 aa)
     
   
  0.973
Phatr30960
Predicted protein (313 aa)
     
   
  0.970
Phatr45356
Predicted protein (479 aa)
     
   
  0.970
Phatr48376
Predicted protein (381 aa)
     
 
    0.964
Phatr12144
Predicted protein (220 aa)
     
   
  0.958
Phatr46994
Predicted protein (730 aa)
     
  0.945
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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