STRINGSTRING
Phatr21660 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr21660" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr21660Predicted protein (2400 aa)    
Predicted Functional Partners:
Phatr18549
Predicted protein (1250 aa)
     
  0.989
Phatr36142
Predicted protein (320 aa)
       
  0.984
Phatr10539
Predicted protein (328 aa)
       
  0.982
Phatr8045
Predicted protein (114 aa)
       
  0.889
Phatr8044
Predicted protein (114 aa)
       
  0.889
Phatr51271
Predicted protein (112 aa)
       
  0.889
Phatr30615
Predicted protein (116 aa)
       
  0.889
Phatr23489
Predicted protein (125 aa)
       
  0.889
Phatr46730
Predicted protein (1807 aa)
     
  0.865
Phatr47992
Predicted protein (432 aa)
     
  0.863
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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