STRINGSTRING
Phatr2182 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr2182" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr2182Predicted protein (360 aa)    
Predicted Functional Partners:
Phatr16814
Predicted protein (662 aa)
     
 
  0.998
Phatr14145
Predicted protein (516 aa)
     
 
  0.998
Phatr43105
Predicted protein (455 aa)
     
 
  0.998
Phatr30365
Predicted protein; Involved in the biogenesis of the 60S ribosomal subunit (677 aa)
     
 
  0.998
Phatr8777
Predicted protein (110 aa)
     
 
  0.998
Phatr11894
Predicted protein (209 aa)
     
 
  0.998
Phatr45356
Predicted protein (479 aa)
     
 
  0.998
Phatr14032
Predicted protein (467 aa)
   
 
  0.997
helicase_6
Predicted protein (476 aa)
     
 
  0.997
Phatr47176
Predicted protein (435 aa)
   
 
  0.995
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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