STRINGSTRING
Phatr21873 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr21873" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr21873Predicted protein (406 aa)    
Predicted Functional Partners:
rpl2
Predicted protein (257 aa)
   
  0.898
Phatr10617
Predicted protein (229 aa)
 
  0.862
Phatr25375
Predicted protein (201 aa)
   
  0.843
Phatr14713
Predicted protein (137 aa)
   
  0.843
Phatr13361
Predicted protein (389 aa)
   
  0.833
Phatr37018
Predicted protein (154 aa)
     
    0.820
Phatr7358
Predicted protein (137 aa)
   
  0.799
Phatr28979
Predicted protein (164 aa)
   
  0.799
Phatr12355
Predicted protein (128 aa)
   
  0.790
Phatr5769
Predicted protein (190 aa)
     
  0.779
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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