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Phatr22113 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr22113" - Bifunctional aspartokinase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr22113Bifunctional aspartokinase (870 aa)    
Predicted Functional Partners:
Phatr46461
Predicted protein (426 aa)
   
  0.999
Phatr49056
Predicted protein (504 aa)
   
  0.992
Phatr35594
Predicted protein (512 aa)
   
  0.992
Sec61alpha
Transport protein Sec61 alpha subunit (472 aa)
       
 
  0.987
Phatr10757
Predicted protein (345 aa)
   
  0.986
Phatr52316
Aspartokinase (468 aa)
 
0.980
METH
Methionine synthase (1245 aa)
       
  0.954
Phatr49903
Predicted protein (654 aa)
   
  0.951
Phatr15917
Cystathionine gamma-lyase (392 aa)
   
  0.951
Phatr43697
Branched-chain-amino-acid aminotransferase (356 aa)
   
  0.946
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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