STRINGSTRING
Phatr22117 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr22117" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr22117Predicted protein (407 aa)    
Predicted Functional Partners:
Phatr51242
Predicted protein (342 aa)
       
  0.977
Phatr15948
Predicted protein (262 aa)
   
 
  0.962
Phatr3559
Predicted protein (351 aa)
   
   
 
0.832
Phatr6834
Predicted protein (143 aa)
     
  0.821
Phatr27735
Predicted protein (538 aa)
   
   
  0.680
Phatr46613
Predicted protein (798 aa)
       
  0.657
Phatr29217
Predicted protein (406 aa)
     
        0.647
Phatr21557
Predicted protein (348 aa)
     
        0.641
Phatr45681
Predicted protein (591 aa)
     
        0.639
Phatr35566
Predicted protein (222 aa)
   
 
  0.616
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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