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GapC1 protein (Phaeodactylum tricornutum) - STRING interaction network
"GapC1" - Glyceraldehyde-3-phosphate dehydrogenase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GapC1Glyceraldehyde-3-phosphate dehydrogenase (379 aa)    
Predicted Functional Partners:
Phatr29157
Phosphoglycerate kinase (441 aa)
   
  0.997
PGK
Phosphoglycerate kinase (448 aa)
   
  0.997
TIM_1
Triosephosphate isomerase (268 aa)
 
  0.996
FbaC2
Fructose-1,6-bisphosphate aldolase (439 aa)
   
  0.986
FbaC5
Fructose-bisphosphate aldolase (358 aa)
   
  0.983
FbaC1
Fructose-bisphosphate aldolase (402 aa)
   
  0.983
Fba3
Cytosolic class II aldolase (400 aa)
   
  0.983
Tkl
Transketolase (664 aa)
   
  0.981
Phatr29260
Transketolase (684 aa)
   
  0.981
Fba4
Cytosolic aldolase (299 aa)
   
  0.974
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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