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Phatr2217 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr2217" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr2217Predicted protein (364 aa)    
Predicted Functional Partners:
PHATR_3140
Predicted protein (196 aa)
       
    0.901
Phatr8945
Aminotransferase (412 aa)
   
  0.754
Phatr52110
Putative uncharacterized protein (427 aa)
   
  0.754
Phatr41686
Predicted protein (430 aa)
   
  0.754
Phatr5762
Predicted protein (236 aa)
   
        0.535
Phatr48952
Predicted protein (791 aa)
     
 
  0.531
CPS-II
Predicted protein (1542 aa)
       
 
  0.522
Phatr24195
CPS III, carbamoyl-phosphate synthase mitochindrial (1463 aa)
       
 
  0.522
Phatr49545
Predicted protein (300 aa)
     
   
  0.517
Phatr18103
Predicted protein (214 aa)
     
   
  0.517
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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