STRINGSTRING
Phatr22315 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr22315" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr22315Predicted protein (326 aa)    
Predicted Functional Partners:
Phatr26515
Predicted protein (272 aa)
     
  0.871
atpB
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane (501 aa)
     
 
  0.864
Phatr22873
Predicted protein (303 aa)
     
  0.828
Phatr15797
Predicted protein (303 aa)
     
  0.828
petC
Cytochrome b6-f complex iron-sulfur subunit (217 aa)
     
        0.826
Phatr13358
Cytochrome b6-f complex iron-sulfur subunit (178 aa)
     
        0.826
Phatr12233
Ubiquinol-cytochrome c reductase iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis (179 aa)
     
        0.826
Phatr31465
Predicted protein (679 aa)
     
 
  0.756
Atp1
ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane (509 aa)
     
 
  0.756
ACL
Atp-citrate synthase (1082 aa)
     
  0.750
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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