STRINGSTRING
Phatr22658 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr22658" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr22658Predicted protein (405 aa)    
Predicted Functional Partners:
BMS1
Ribosome biogenesis protein BMS1 (1096 aa)
     
  0.977
Phatr43713
Predicted protein (609 aa)
     
 
  0.974
Phatr51007
Predicted protein (296 aa)
     
 
  0.971
Phatr18258
Predicted protein (743 aa)
     
 
  0.971
Phatr43574
Predicted protein; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (499 aa)
     
 
  0.970
Phatr17974
Predicted protein (475 aa)
     
  0.967
Phatr21557
Predicted protein (348 aa)
     
        0.958
Phatr45888
Predicted protein (590 aa)
     
    0.950
Phatr25666
Predicted protein (885 aa)
     
  0.931
Phatr15757
Predicted protein (181 aa)
     
  0.915
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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