Rab1a protein (Phaeodactylum tricornutum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

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[Homology]

Score

Rab1a

Predicted protein (203 aa)

Predicted Functional Partners:

Phatr42274

0.854

RabGDI

0.848

Phatr33914

0.830

Phatr10670

0.785

Phatr21198

0.759

RabX2

0.745

Phatr12157

0.743

Phatrdraft998

0.742

PtRabX1

0.742

Phatr9033

0.739

Your Current Organism:

Phaeodactylum tricornutum

NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Phatr10670	Phatr21198	Phatr10670	Phatr21198	Predicted protein	Predicted protein	0.977
Phatr10670	Phatr33914	Phatr10670	Phatr33914	Predicted protein	Predicted protein	0.985
Phatr10670	Phatr42274	Phatr10670	Phatr42274	Predicted protein	Predicted protein	0.990
Phatr10670	Rab1a	Phatr10670	Phatr22713	Predicted protein	Predicted protein	0.785
Phatr12157	Phatrdraft998	Phatr12157	Phatrdraft998	Predicted protein	Predicted protein	0.429
Phatr12157	PtRabX1	Phatr12157	Phatrdraft853	Predicted protein	Predicted protein	0.429
Phatr12157	Rab1a	Phatr12157	Phatr22713	Predicted protein	Predicted protein	0.743
Phatr12157	RabX2	Phatr12157	Phatr44216	Predicted protein	Predicted protein	0.429
Phatr21198	Phatr10670	Phatr21198	Phatr10670	Predicted protein	Predicted protein	0.977
Phatr21198	Phatr33914	Phatr21198	Phatr33914	Predicted protein	Predicted protein	0.978
Phatr21198	Phatr42274	Phatr21198	Phatr42274	Predicted protein	Predicted protein	0.991
Phatr21198	Rab1a	Phatr21198	Phatr22713	Predicted protein	Predicted protein	0.759
Phatr33914	Phatr10670	Phatr33914	Phatr10670	Predicted protein	Predicted protein	0.985
Phatr33914	Phatr21198	Phatr33914	Phatr21198	Predicted protein	Predicted protein	0.978
Phatr33914	Phatr42274	Phatr33914	Phatr42274	Predicted protein	Predicted protein	0.986
Phatr33914	Rab1a	Phatr33914	Phatr22713	Predicted protein	Predicted protein	0.830
Phatr42274	Phatr10670	Phatr42274	Phatr10670	Predicted protein	Predicted protein	0.990
Phatr42274	Phatr21198	Phatr42274	Phatr21198	Predicted protein	Predicted protein	0.991
Phatr42274	Phatr33914	Phatr42274	Phatr33914	Predicted protein	Predicted protein	0.986
Phatr42274	Phatr9033	Phatr42274	Phatr9033	Predicted protein	Predicted protein	0.582

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