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STRINGSTRING
Rab1a protein (Phaeodactylum tricornutum) - STRING interaction network
"Rab1a" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rab1aPredicted protein (203 aa)    
Predicted Functional Partners:
RabGDI
Rab GDP dissociation inhibitor; Belongs to the Rab GDI family (446 aa)
      
 
  0.817
Phatr42274
Trafficking protein particle complex subunit; May play a role in vesicular transport from endoplasmic reticulum to Golgi (194 aa)
      
 
  0.800
Phatr33914
Predicted protein (152 aa)
      
 
  0.726
Phatr10670
Predicted protein (152 aa)
        
 
  0.714
Phatr21198
Predicted protein (205 aa)
      
 
  0.708
Phatr28577
Predicted protein (377 aa)
      
 
  0.698
SybE
Predicted protein; Belongs to the synaptobrevin family (227 aa)
      
 
  0.683
Phatr50387
Predicted protein (393 aa)
      
 
  0.681
Phatr42975
Predicted protein; Belongs to the STXBP/unc-18/SEC1 family (689 aa)
      
 
  0.678
SLY1
Predicted protein; Belongs to the STXBP/unc-18/SEC1 family (648 aa)
      
 
  0.665
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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