STRINGSTRING
Phatr22909 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr22909" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr22909Predicted protein (443 aa)    
Predicted Functional Partners:
Phatr34582
Predicted protein (334 aa)
 
   
  0.973
Phatr4025
Predicted protein (278 aa)
         
  0.927
Phatr22113
Bifunctional aspartokinase (870 aa)
   
  0.902
GltX
Ferredoxin-dependent glutamate synthase, fusion of large and small subunits (1591 aa)
   
  0.887
Phatr24739
Predicted protein (1594 aa)
   
  0.887
ACC2
Biotin carboxylase (2282 aa)
   
 
  0.735
GDCP
Glycine decarboxylase p-protein (1005 aa)
       
  0.730
Phatr17238
Anthranilate synthase (958 aa)
   
 
  0.727
Phatrdraft1682
Anthranilate synthase (927 aa)
     
 
  0.711
Phatr48694
Homoserine dehydrogenase (437 aa)
     
  0.679
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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