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STRINGSTRING
Phatr23077 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr23077" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr23077Predicted protein (379 aa)    
Predicted Functional Partners:
Phatr46372
Absent, small, or homeotic discs 2 (687 aa)
     
 
  0.894
Phatr48160
Predicted protein (677 aa)
     
 
  0.891
Phatr50120
Predicted protein (167 aa)
     
 
  0.802
Phatr28743
Predicted protein (203 aa)
     
 
  0.794
Phatr45431
Histone deacetylase (1158 aa)
     
 
  0.783
Sec13
Predicted protein; Belongs to the WD repeat SEC13 family (330 aa)
   
 
  0.770
Phatr16875
Predicted protein (164 aa)
     
 
  0.721
DDB1
Damage-specific DNA binding protein 1 (1284 aa)
     
 
  0.679
Phatr11735
Predicted protein; Belongs to the AAA ATPase family (389 aa)
     
 
  0.673
H2A-m1
Histone H2A (138 aa)
     
 
  0.642
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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